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The fpocket suite of programs is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions a...
Choose a file or drop it here... This field is required! Load a PDB file for pocket detection.
Nov 4, 2022 · 其本质都是求沿着梯度方向求最小损失的极值点，PLA能使极值最小化为0，而pocket可随着迭代次数来近似得到最小极值点。
Oct 3, 2011 · fpocket - free protein cavity detection
ICM Pocket Finder is a method which will identify ligand binding sites in any protein, DNA or RNA structure. Protein-ligand binding sites are identified based on the grid potential map of van der Waals interaction of ...
Apr 19, 2023 · [3]Le Guilloux, V., Schmidtke, P. & Tuffery, P. Fpocket: An open source platform for ligand pocket detection.BMC Bioinformatics. doi.org/10.1186/1471-21. [4] Cimermancic, P. et al. CryptoSite: expanding...
May 21, 2024 · Here, we developed a platform software AlphaTraj in which a computational strategy that divides the whole protein pocket into subpockets and examines various properties of the subpockets such as surviva...
