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A combined cohort of TCGA, TARGET and GTEx samples The Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types.
Here, we provide protocols to perform differential-expressed gene analysis of TCGA and GTEx RNA-Seq data from human cancers, complete integrative GO and network analyses with focus on clinical and survival data, and i...
Compare tumor vs normal within or across tissue types Use Xena to compare TCGA tumor samples to GTEx normal samples to see if your gene or transcript is up- or down-regulated in one or more cancer types.
Jun 15, 2025 · The project has generated comprehensive genomic profiles from over 11,000 tumor samples, creating an unprecedented resource for understanding cancer biology. The Genotype-Tissue Expression (GTEx) projec...
This repository contains a set of scripts to process and combine TCGA (The Cancer Genome Atlas) and GTEX (Genotype-Tissue Expression) datasets. The goal is to prepare these datasets for downstream analyses, including ...
TCGAbiolinks TCGAbiolinks is a well-documented bioconductor package for working with GDC data. In addition to the TCGA and TARGET projects, TCGAbiolinks also provides access to gene expression from healthy individuals...
The Genotype-Tissue Expression (GTEx) project is an ongoing effort to build a comprehensive public resource to study tissue-specific gene expression and regulation. Samples were collected from 53 non-diseased tissue s...
